CESSHIV-1 database

General information on HIV-1 isolate

# 2710

Accession number	AB480046
Name	p03GH194AG48
Subtype	02D
Country	Ghana
Sampling year	2003
Patient	GH194

AB480046 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctagccctca gatgctgcat ataagcagcc gctttctgct tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactgggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc cttaagtagt gt

Isolates with identical sequences of region:

AB480044(#2708) AB480045(#2709)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy