CESSHIV-1 database

General information on HIV-1 isolate

# 2752

Accession number	AB485661
Name	BCF-Dioum
Subtype	CRF06_cpx
Country	DRC
Submitted to NCBI	2009
Patient	BCFdioum

AB485661 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ttaaccctaa gatgctgcat aaaagcagcc gcttctcgct tgtactgggt ctctcttgct agaccagatt agagcctggg agctctctga ctagcagggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttacagtagt gt

Isolates with identical sequences of region:

AB485660(#2751)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy