CESSHIV-1 database

General information on HIV-1 isolate

# 3583

Accession number	AF102215
Name	SE5746
Subtype	B
Country	Sweden
Submitted to NCBI	1998
Patient	5746

AF102215 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctgactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

D10112(#76) DQ848482(#3648) U73096(#2523) U80533(#2552) U81455(#2560) U81458(#2563) U81460(#2565) U81475(#2580)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy