CESSHIV-1 database

General information on HIV-1 isolate

# 3170

Accession number	AF102220
Name	UG5218
Subtype	A
Country	Uganda
Submitted to NCBI	1998
Patient	UG5218

AF102220 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gctttcgccc tgtactgggt ctctcttgtt agaccagatt cgagcctggg agctctctgg ctagcagggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy