CESSHIV-1 database

General information on HIV-1 isolate

# 1397

Accession number	AF170546
Name	94TH7091
Subtype	CRF01_AE
Country	Thailand
Sampling year	1994
Patient	TH709

AF170546 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

taa-ccctcaa a-cgtgcataa aagcagc-gct tttcgcttgt acgtggtctc tcttgttaga ccaggtc-gag cccgggagct ctctggctgg caagggaacc cactgcttaa agcctcaata aagcttgcct tgagtgctta aagtggtgt

Isolates with identical sequences of region:

AF170545(#1396) AF170547(#1398)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy