CESSHIV-1 database

General information on HIV-1 isolate

# 1307

Accession number	AF196741
Name	92RW60
Subtype	A
Country	Rwanda
Sampling year	1992

AF196741 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttttcgct tgtactgggt ctctcttgtt agaccagata -gagcctggga gctctctgac tatctaggga acccactgct taagcctcaa taaagcttgc cttgagtgtt ctaagtagtg t

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy