CESSHIV-1 database

General information on HIV-1 isolate

# 1324

Accession number	AF196761
Name	93GH07
Subtype	CRF02_AG
Country	Ghana
Sampling year	1993

AF196761 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gacgctgcat ataagcagct gcttctcgcc tgtactgggt ctctcttgct agaccagatt tgagcctggg agctctctga ctagcagagg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

FJ614926(#2343) FJ614927(#2344) FJ614931(#2348) FJ614940(#2357) FJ614951(#2370)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy