CESSHIV-1 database

General information on HIV-1 isolate

# 1329

Accession number	AF196766
Name	96GH22
Subtype	AU
Country	Ghana
Sampling year	1996

AF196766 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat aaaagcagcc gcttctcgct tgtactgggt ctctcttgct agaccagat-t gagcctggga gctctctgac tagcagagga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg t

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy