CESSHIV-1 database

General information on HIV-1 isolate

# 1520

Accession number	AF254733
Name	B66_1
Subtype	A
Country	Tanzania
Sampling year	1996
Patient	66

AF254733 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttttcgct tgtactgggt ctctcttggt agaccagata -gagcctggga gctctctggc tagcgaggga acccactgct tatagcctca ataaagcttg ccttgagtgc ttaaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy