CESSHIV-1 database

General information on HIV-1 isolate

# 1524

Accession number	AF254737
Name	G64, G641
Subtype	U
Country	Tanzania
Sampling year	1996
Patient	64

AF254737 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

tcaaccctca gatgctgcat ataagcagct gcttttcgct tgtactgggt ctctctaggt agaccagatc tgagcctggg agctctctgg ctatctgggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tctaagtagt gt

Isolates with identical sequences of region:

EU293450(#1210)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy