CESSHIV-1 database

General information on HIV-1 isolate

# 3731

Accession number	AF453527
Name	HIV_1P1E
Subtype	B
Country	Italy
Submitted to NCBI	2001
Patient	P1(1140)

AF453527 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtacggtgt ctctctagtt agaccagatc tgagcctggg acctctctgg ctagctaggg aacccactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctagctag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy