CESSHIV-1 database

General information on HIV-1 isolate

# 1531

Accession number	AM076840
Name	PG174_1
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG174

AM076840 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

tcaaccctca gatgctgcat ataagcagct gctttccgct tgtactgggt ctctctaggt agaccagatc tgagcctggg agctctctgg atatctaggg aacccactgc ttaggcctca ataaagcttg ccttgagtgc tataagtagt gt

Isolates with identical sequences of region:

AM076841(#1532) AM076842(#1533)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy