CESSHIV-1 database

General information on HIV-1 isolate

# 1589

Accession number	AM076887
Name	PG218_10
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG218

AM076887 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ccagccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctaggt agaccagatc tgagcccggg agctctctgg cta-cttgggg acccactgct taagcctcaa taaagcttgc cttgagtgtt ctaagtagtg t

Isolates with identical sequences of region:

AM076888(#1590)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy