CESSHIV-1 database

General information on HIV-1 isolate

# 1991

Accession number	AY610972
Name	00SP19082
Subtype	BC
Country	Spain (Equatorial Guinea)
Sampling year	2000

AY610972 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ccagccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctgggt agaccagatc tgagcctggg agctctctgg ctaactaggg gacccactgc ttaagcctca ataaagcttg ccttgagtgc tctaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy