CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3137
Accession number AY610994
Name 03SP109169
SubtypeCRF02_AG
CountrySpain (Equatorial Guinea)
Sampling year 2003

AY610994 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttctcgcc tgtactgcgt ctctcttgct agaccagatt tgagcctggg agctctctga ctagcagggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012