CESSHIV-1 database

General information on HIV-1 isolate

# 1091

Accession number	BD437626
Name	TV002 patent
Subtype	C
Country	Japan
Submitted to NCBI	2004
Patient	TV002
Comments	Patent

BD437626 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ccagccctca gatgctgcat ataagcagcg gcttttcgcc tgtactgggt ctctctaggt agaccagatc cgagcctggg agctctctgt ctatctgggg aacccactgc ttaggcctca ataaagcttg ccttgagtgc tctaagtagt gt

Isolates with identical sequences of region:

AX455929(#1085) AY162224(#240)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy