CESSHIV-1 database

General information on HIV-1 isolate

# 3088

Accession number	DQ848374
Name	ib12
Subtype	B
Country	USA
Sampling year	1990
Patient	B-child

DQ848374 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagtcctca gatgctgcat ataagcagct gctttctgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc tta-gcctcaa taaagcctgc cttgagtgct ttaagtagtg t

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy