CESSHIV-1 database

General information on HIV-1 isolate

# 3109

Accession number	DQ848397
Name	mc10
Subtype	B
Country	USA
Sampling year	1990
Patient	C-mother

DQ848397 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctagtt agaccagatc tgagcctggg agctctctgg ctgactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttctagtagt gt

Isolates with identical sequences of region:

DQ848389(#3102) DQ848390(#2826) DQ848391(#3103) DQ848393(#3105) DQ848394(#3106) DQ848395(#3107) DQ848396(#3108) DQ848398(#3110) DQ848399(#3111) DQ848400(#3112) DQ848401(#3113) DQ848402(#3114) DQ848403(#3115)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy