CESSHIV-1 database

General information on HIV-1 isolate

# 3121

Accession number	DQ848409
Name	ic6
Subtype	B
Country	USA
Sampling year	1990
Patient	C-child

DQ848409 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctagct agaccagatc tgagcctggg agctctctgg ctgactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

DQ848404(#3116) DQ848405(#3117) DQ848406(#3118) DQ848407(#3119) DQ848408(#3120) DQ848422(#3010)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy