CESSHIV-1 database

General information on HIV-1 isolate

# 3600

Accession number	DQ848433
Name	md9
Subtype	B
Country	USA
Sampling year	1990
Patient	D-mother

DQ848433 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctctttgcc tgttctgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactgggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

DQ848428(#3595) DQ848431(#3598)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy