CESSHIV-1 database

General information on HIV-1 isolate

# 2827

Accession number	DQ848435
Name	md11
Subtype	B
Country	USA
Sampling year	1990
Patient	D-mother

DQ848435 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgttctgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactgggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

DQ848425(#3592) DQ848430(#3597) DQ848432(#3599) DQ848436(#3602) DQ848439(#3605) DQ848440(#3606) DQ848452(#3618)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy