CESSHIV-1 database

General information on HIV-1 isolate

# 3616

Accession number	DQ848450
Name	id10
Subtype	B
Country	USA
Sampling year	1990
Patient	D-child

DQ848450 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgttctgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ttaactgggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

DQ848441(#3607) DQ848444(#3610)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy