CESSHIV-1 database

General information on HIV-1 isolate

# 3644

Accession number	DQ848478
Name	ie1
Subtype	B
Country	USA
Sampling year	1990
Patient	E-child

DQ848478 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca aatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt ggaccacatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gc

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy