CESSHIV-1 database

General information on HIV-1 isolate

# 1723

Accession number	EF370234
Name	96JWK4_2688
Subtype	B
Country	South Korea
Sampling year	1996
Patient	WK(JWK)

EF370234 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

caaaccttca gatgctgcat aaaagcagct gctttttgcc tgtactgggt ctttctggtt agaccagatt tgaccctggg agctttctgg ctgattaggg aacccactgc ttaagcttca ataaagcttc ccttgagtgc tttaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy