CESSHIV-1 database

General information on HIV-1 isolate

# 3012

Accession number	EF370237
Name	00JWK12_2642s1
Subtype	B
Country	South Korea
Sampling year	2000
Patient	WK(JWK)

EF370237 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gt

Isolates with identical sequences of region:

EF370183(#1456) EF370197(#2231) EF370206(#1711) EF370207(#3152) EF370233(#1722) EF370242(#1719) EF370285(#2253) EF370305(#1753) EF370360(#1779) EF370369(#1796) EU047626(#1828) EU047627(#1829) EU047628(#1830) EU047629(#1831) EU047630(#1832) EU047633(#2942) EU047634(#1833) EU047645(#1843)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy