CESSHIV-1 database

General information on HIV-1 isolate

# 1733

Accession number	EF370263
Name	95KYR11_2891
Subtype	B
Country	South Korea
Sampling year	1995
Patient	KYR

EF370263 isolate has foldings of [DIS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgaaccctca gatgctgcat aaaagcagct gctctttgcc tgtactaggt ctctctggtt agaccagatc tgagcctagg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy