CESSHIV-1 database

General information on HIV-1 isolate

# 2252

Accession number	EF370283
Name	01YJN9_2503s1
Subtype	B
Country	South Korea
Sampling year	2001
Patient	YJN

EF370283 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat aaaagcaggt gctttttgct tgtactgggt ctatctggtt agaccagatg tgagcttggg agctctctgg ctaagtaggg aacccactgc ctaagcctca ataaagcttg ccttgagtgc tttaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy