CESSHIV-1 database

General information on HIV-1 isolate

# 1769

Accession number	EF370325
Name	01LHS2_2438
Subtype	B
Country	South Korea
Sampling year	2001
Patient	LHS

EF370325 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

tgaaccctca gatgctgcat aaaagcagcc gctttctgct tgtactgggt ctctctggtt agaccagatc agagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

AY839827(#1416) EF370323(#1768)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy