CESSHIV-1 database

General information on HIV-1 isolate

# 1028

Accession number	EU031914
Name	07MYKLD48
Subtype	01B
Country	Malaysia
Sampling year	2007

EU031914 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ttaaccctca gatgctgcat aaaagcagcc gcttctcgct tgtactgggt ctctcttgtt agaccaggt-t gagcccggga gctctctggc tagcaaggga acccactgct taaagcctca ataaagcttg ccttgagtgc ttaaagtggt gt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy