CESSHIV-1 database

General information on HIV-1 isolate

# 1836

Accession number	EU047637
Name	01OSG2_3316
Subtype	B Korean
Country	South Korea
Sampling year	2001
Patient	DNR-O(OSG)

EU047637 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgaaccctca gatgctgcat aaaagcagct gctttctgcc tgtactgggt ctctctggtt agaccagatc tgagcctgag agctctctgg ctgactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gt

Isolates with identical sequences of region:

EF370306(#1754) EU047636(#1835) EU047640(#1838)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy