CESSHIV-1 database

General information on HIV-1 isolate

# 3153

Accession number	EU047697
Name	03HSJ9_3524s1
Subtype	B
Country	South Korea
Sampling year	2003
Patient	HSJ

EU047697 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca aatgctgcat ataagcagct gctttctgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaaagctt gccttgagtg cttcaagtag tgt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy