CESSHIV-1 database

General information on HIV-1 isolate

# 1206

Accession number	EU293446
Name	99ZALT21
Subtype	C
Country	South Africa
Sampling year	1999
Patient	21

EU293446 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

tca-ccctcag atgctgcata taagcagctg cttttcgcct gtactgggtc tctctaggta gaccagatct gagcccggga gctctctggc taactaggga acccactgct taagcctcaa taaagcttgc cttgagtgct ctaagtagtg t

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy