CESSHIV-1 database

General information on HIV-1 isolate

# 2302

Accession number	EU938106
Name	04RU1122
Subtype	A
Country	Russia
Sampling year	2004

EU938106 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactaggg tctctctggt tagaccagat c-gagcctggg agctctctgg ctagctaggg aacccactgg ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy