CESSHIV-1 database

General information on HIV-1 isolate

# 1855

Accession number	FJ771010
Name	07BR844
Subtype	F1
Country	Brazil
Sampling year	2007

FJ771010 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctttccctca gatgctgcat ataagcagcc gcttttcgcc tgtactgggt ctctctagtt agaccagatt tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy