CESSHIV-1 database

General information on HIV-1 isolate

# 3271

Accession number	GQ386783
Name	G2p11
Subtype	B
Country	Spain
Sampling year	1989
Patient	89ES061

GQ386783 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctcttgtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

AF256204(#1070) AF256206(#82) AF256207(#83) AF256208(#1071) GQ386779(#3264) GQ386780(#3265) GQ386781(#3269) GQ386782(#3270) GQ386784(#3272) GQ386785(#3273) GQ386786(#3274) GQ386787(#3275) GQ386792(#3280) GQ386793(#3281) U80531(#2550)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy