CESSHIV-1 database

General information on HIV-1 isolate

# 3771

Accession number	M58216
Name	L6_01
Subtype	B
Country	France
Sampling year	1989
Patient	P1

M58216 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gcnttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

M58201(#3757) M58202(#3758) M58226(#3781) M58234(#3789) M58283(#3838)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy