CESSHIV-1 database

General information on HIV-1 isolate

# 3776

Accession number	M58221
Name	L6_06
Subtype	B
Country	France
Sampling year	1989
Patient	P1

M58221 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gacgctgcat ataagcagct gcnttttgcc tgtactgggt ctctctggtt agaccagatc cgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy