CESSHIV-1 database

General information on HIV-1 isolate

# 2506

Accession number	U51286
Name	92UG031
Subtype	A
Country	Uganda
Sampling year	1992
Patient	UG031

U51286 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctcttgtt agaccagatc -gagcctggga gctctctggc tagcgaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg t

Isolates with identical sequences of region:

AF196743(#1309) AF254683(#1473)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy