CESSHIV-1 database

General information on HIV-1 isolate

# 2507

Accession number	U51287
Name	92UG037
Subtype	A1
Country	Uganda
Sampling year	1992
Patient	UG037

U51287 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttctcgct tgtactgggt ctctcttggt agaccagatc -gagcctggga gctctctggc tagcgaggga acccactgct taagcctcaa taaagcttgc cgtgagtgct tcaagtagtg t

Isolates with identical sequences of region:

AB253429(#912)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy