CESSHIV-1 database

General information on HIV-1 isolate

# 737

Accession number	AB231896
Name	GHNJ188
Subtype	CRF02_AG
Country	Ghana
Sampling year	2003

AB231896 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gtttgggagt ggctaaccct cagatgctgc atataagcag ctgcttctcg cttgtactgg gtctctcttg ctagaccaga tttgagcctg ggagctctct gactagcagg ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy