CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3574
Accession number AF102203
Name GM6150
SubtypeG
CountryGambia
Submitted to NCBI 1998
Patient6150

AF102203 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gctggggagt ggctaaccct cagaagctgc atataagcag ccgcttctcg cctgtactgg gtctctctag ctggaccaga tttgagcctg ggagctctct ggctagcagg ggaacccact gcttaagcct caaataaagc ttgccttgag tgcctcaagt agtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012