CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3576
Accession number AF102206
Name IC5381
SubtypeG
CountryCote d'Ivoire
Submitted to NCBI 1998
Patient5381

AF102206 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gtcggggagt ggctaaccct cagatgctgc atataagcag ctgcttcgcg cctgtactgg gtctctcttg ctagaccaga t-tgagcctgg gagctctctg actagcagag gaacccactg cttaagcctc aataaagctt gccttgagtg cttcaagtag tgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012