CESSHIV-1 database

General information on HIV-1 isolate

# 1283

Accession number	AF196712
Name	97TH90
Subtype	B
Country	Thailand
Sampling year	1997

AF196712 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actaggggag tggcgagccc tcagatgctg catataagca gctgctcttt gcctgtactg ggtctctctg gttagaccag atctgagcct gggagatctc tggttgacta gggaacccac tgcttaagcc tcaataaagc ttgccttgag tgcttcaagt agtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy