CESSHIV-1 database

General information on HIV-1 isolate

# 1299

Accession number	AF196731
Name	94ET93
Subtype	C
Country	Ethiopia
Sampling year	1994

AF196731 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggg-agtg gccaaccctc agatgctgca tataagcagc tgcttttcgc ttgtactggg tctctctagg tagaccagat ctgagcctgg gagctctctg gctatctggg gaacccactg cttaagcctc aataaagctt gccttgagtg ctctaagtag tgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy