CESSHIV-1 database

General information on HIV-1 isolate

# 1301

Accession number	AF196733
Name	97KE46
Subtype	C
Country	Kenya
Sampling year	1997

AF196733 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggg-agtg gtcaaccctc agatgctgca tataagcagc tgcttttcgc ctgtactggg tctctctagg tggaccagat ctgagcctgg gagctctctg gctatctagg gaacccactg cttaagcctc aataaagctt gccttgagtg ctctaagtag tgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy