CESSHIV-1 database

General information on HIV-1 isolate

# 2086

Accession number	AF196739
Name	89UG57
Subtype	AD
Country	Uganda
Sampling year	1989

AF196739 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctaaccct cagatg-tgca tataagcagc tgcttttcgc ttgtactggg tctctcttgt tagaccagat c-gagcctggg agctctctgg ctagctaggg aacc-actgct taagcctcaa taaagcttgc cttaagtgct tcaagtagtg t

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy