CESSHIV-1 database

General information on HIV-1 isolate

# 1941

Accession number	AF286246
Name	94CY034_2L
Subtype	A2
Country	Cyprus
Sampling year	1994
Patient	CY034

AF286246 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctaaccct cagatgctgc atataagcag ctgcttctcg catgtactgg gtctctcttg ttggaccaga ta-gagcctgg gagctctctg gctagcaggg gaacccactg cttaagcctc aataaagctt gccttgagag cttcaagtag tgt

Isolates with identical sequences of region:

AF286251(#1943)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy