CESSHIV-1 database

General information on HIV-1 isolate

# 1353

Accession number	AF413988
Name	98BY10443 clone 1-ltr
Subtype	CRF03_AB
Country	Belarus (Russia)
Sampling year	2000
Patient	BY10443

AF413988 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctaaccct cagatgctgc atataagcag ctgcttttcg cctgtactgg gtctctcttg ttagaccaga tc-gagcctgg gagctctctg gctagctagg gaacccactg cttaagcctc aataaagctt gccttgagtg ctttaagtag tgt

Isolates with identical sequences of region:

AF413989(#1354) AF414006(#286) HM583635(#3875)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy