CESSHIV-1 database

General information on HIV-1 isolate

# 1534

Accession number	AM076843
Name	PG81_6
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG81

AM076843 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

accggggagt ggccagccct cagatgctgc atataagcag ctgcttttcg cctgtacggt gtctctctag gtagaccaga tctgagcccg ggagctctct ggctatctgg ggaacccact gcttaagcct caataaagct tgccttgagt gctcaaagta gtgt

Isolates with identical sequences of region:

AM076844(#1544) AM076845(#1545)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy