CESSHIV-1 database

General information on HIV-1 isolate

# 1663

Accession number	AY957478
Name	INF5 clone 2
Subtype
Country	Tanzania
Submitted to NCBI	2005
Patient	INF5

AY957478 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggg-agtg gctaaccctc agatgctgca tataagcagc tgccttttgc ctgtactggg tctctctggt tagaccagat tagagcctgg gagctctctg gctagctagg gaacccactg cttaagcctc aataaagctt gccttgagtg ctttaagtag tgt

Isolates with identical sequences of region:

AY957477(#1662) AY957480(#1665)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy